Guess I didn't catch the first time that you said it is happening on different carbs.....
When you drain the bowl, does anything come out besides fuel? Yes, Kreem can break down over time. I personally think Kreem sucks and that epoxy is the best way, (see:
http://www.caswellplating.com/aids/epoxygas.htm ) but that may be beside the point.
What if there is some crud in the fuel inlet pipes... If it clogs up one carb's feed tube, all of the fuel and pressure forces too much fuel to another carb? Then you drain a bowl, which relieves pressure and the crud loosens? I don't think it's a fuel filter problem but a clear plastic filter will show you if anything is being caught.
You're sure the float tangs are properly fitted to the fuel jet needles? You're sure that your needles are sealing by turning the carbs over and blowing air into the inlet fuel pipes? I know it's a PITA to yank the carbs but the more you do it the faster it goes. First time I did the carbs on mine it took me 10 light years to reconnect the throttle linkage but now I have some tricks. Can get the carbs off in like 20 minutes. I'd say yank the carbs and while they are apart, come back with any of your observations. I don't think you'll find any cheap carbs but you may find someone who can ship you a spare set for trial....
I feel your pain... I'm still trying to dial mine in. Spent like 4 years trying to dial in my XS11 carbs.....
The floats do not feel to me like they are foam filled. The XS11 floats were air filled. I doubt Yamaha changed that from the XS11.... I've seen float problems before.
When the carb starts overflowing, can you *gently* tap around the carb to get it to stop? Don't put a hole in your float bowl by tapping too hard but if you can tap and get it to stop flowing, you definitely have a needle/seat issue. How are the seats - are they scratched or scored?
Just because it seems to happen to another carb doesn't mean there is no pattern in the problem. If you find that it always starts with one carb and ends up with another and repeats, that would help with the troubleshooting.
If - when it isn't flooding - the bike runs really well, I wouldn't sell it because of a carb problem..... You won't be able to get as much because of the unsolved problem.
If you get stuck on the carbs you could send them here:
http://www.motorcyclecarbs.com/Services_W123.cfm
Start simple. Make sure everything is at stock, especially float level. One trick is to attach a clear tube to each bowl drain... you can do this with a special screw...... then you hold the tube higher than the bowl and watch the fuel level rise up the tube. You compare the levels of the tubes. If they are borderline too high when the engine is cold, they may flood when it warms up. You may have 2 carbs with rich float levels. Or 2 carbs with bad floats. Gotta be a pattern here we can follow....
Does the fuel pump operate too much? Should click when the bike starts but shouldn't be going nuts. You can disconnect the carb fuel inlet pipe and then turn on the key to observe how much fuel the pump is squirting.